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CONSTANd

Just apply CONSTANd (the normalization algorithm used in QCQuan) to your matrix of (aggregated) quantification values. If you have multiple experiments, you need to normalize each matrix separately.
Initial Publication: Maes, E., Hadiwikarta, W. W., Mertens, I., Baggerman, G., Hooyberghs, J., & Valkenborg, D. (2016). CONSTANd: A normalization method for isobaric labeled spectra by constrained optimization. Molecular & Cellular Proteomics, 15(8), 2779-2790.

Upload a csv-file containing only the matrix of quantification values (may contain header and ID column. Delimiters may be ',' or '\t' or ';'):
File contains header (first row).
File contains row identifiers (first column).

Found a bug? Send us the details and job ID at qcquan@vito.be.